10x visium spot-barcoded fastqs Search Results


visium spatial barcodes  (10X Genomics)
86
10X Genomics visium spatial barcodes
Figure 1. <t>Visium</t> spatial transcriptomics of D7.5 uterus from four different mice. Histology (Hematoxylin and Eosin staining) of four uterine sections (A). The spatial transcriptomic results of four uterine sections (B). The dots of the same uterine compartment were labeled with one color. The heatmap of DEGs in different microenvironments (C). The colors from the blue to yellow correspond to the gene expression levels from low to high.
Visium Spatial Barcodes, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/10x+visium+spot-barcoded+fastqs/expression+gene+slides+spatial+visium/pm35357464-77-44-19
Average 86 stars, based on 1 article reviews
visium spatial barcodes - by Bioz Stars, 2026-09
86/100 stars
  Buy from Supplier
spaceranger  (10X Genomics)
86
10X Genomics spaceranger
Figure 1. <t>Visium</t> spatial transcriptomics of D7.5 uterus from four different mice. Histology (Hematoxylin and Eosin staining) of four uterine sections (A). The spatial transcriptomic results of four uterine sections (B). The dots of the same uterine compartment were labeled with one color. The heatmap of DEGs in different microenvironments (C). The colors from the blue to yellow correspond to the gene expression levels from low to high.
Spaceranger, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/10x+visium+spot-barcoded+fastqs/spaceranger/pm38653236-277-25-30
Average 86 stars, based on 1 article reviews
spaceranger - by Bioz Stars, 2026-09
86/100 stars
  Buy from Supplier
space ranger software  (10X Genomics)
86
10X Genomics space ranger software
Figure 1. <t>Visium</t> spatial transcriptomics of D7.5 uterus from four different mice. Histology (Hematoxylin and Eosin staining) of four uterine sections (A). The spatial transcriptomic results of four uterine sections (B). The dots of the same uterine compartment were labeled with one color. The heatmap of DEGs in different microenvironments (C). The colors from the blue to yellow correspond to the gene expression levels from low to high.
Space Ranger Software, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/10x+visium+spot-barcoded+fastqs/cellranger/pm35357464-77-14-19
Average 86 stars, based on 1 article reviews
space ranger software - by Bioz Stars, 2026-09
86/100 stars
  Buy from Supplier

Image Search Results


Figure 1. Visium spatial transcriptomics of D7.5 uterus from four different mice. Histology (Hematoxylin and Eosin staining) of four uterine sections (A). The spatial transcriptomic results of four uterine sections (B). The dots of the same uterine compartment were labeled with one color. The heatmap of DEGs in different microenvironments (C). The colors from the blue to yellow correspond to the gene expression levels from low to high.

Journal: Biology of reproduction

Article Title: Spatial transcriptomic profiles of mouse uterine microenvironments at pregnancy day 7.5†.

doi: 10.1093/biolre/ioac061

Figure Lengend Snippet: Figure 1. Visium spatial transcriptomics of D7.5 uterus from four different mice. Histology (Hematoxylin and Eosin staining) of four uterine sections (A). The spatial transcriptomic results of four uterine sections (B). The dots of the same uterine compartment were labeled with one color. The heatmap of DEGs in different microenvironments (C). The colors from the blue to yellow correspond to the gene expression levels from low to high.

Article Snippet: Raw FASTQ files along with microscope slide image for each sample were processed by Space Ranger software (version 1.1, 10x Genomics) with “spaceranger count” pipeline, which used STAR with default parameters for aligning reads against mouse reference genome mm10 “refdata-gex-mm10-2020A.” This pipeline used the Visium spatial barcodes to generate feature-spot matrix of unique molecular identifier (UMI) counting.

Techniques: Staining, Labeling, Gene Expression

Figure 3. scRNA-Seq cell clustered mapped to Visium spatial transcriptomics. The redder the color is, the more likely the cell type is located at this position. Str1, Stroma 1 (A); Str2, Stroma 2 (B); Str3, Stroma 3 (C); Endo, Endothelium (D); Peri: Pericyte (E); Epi: Epithelium (F); Meso: Mesothelium (G); RBC (H); Mo: Myeloid cells (I); NK cells (J); Den: Dendritic cells (K); LyB: Lymphocyte B.

Journal: Biology of reproduction

Article Title: Spatial transcriptomic profiles of mouse uterine microenvironments at pregnancy day 7.5†.

doi: 10.1093/biolre/ioac061

Figure Lengend Snippet: Figure 3. scRNA-Seq cell clustered mapped to Visium spatial transcriptomics. The redder the color is, the more likely the cell type is located at this position. Str1, Stroma 1 (A); Str2, Stroma 2 (B); Str3, Stroma 3 (C); Endo, Endothelium (D); Peri: Pericyte (E); Epi: Epithelium (F); Meso: Mesothelium (G); RBC (H); Mo: Myeloid cells (I); NK cells (J); Den: Dendritic cells (K); LyB: Lymphocyte B.

Article Snippet: Raw FASTQ files along with microscope slide image for each sample were processed by Space Ranger software (version 1.1, 10x Genomics) with “spaceranger count” pipeline, which used STAR with default parameters for aligning reads against mouse reference genome mm10 “refdata-gex-mm10-2020A.” This pipeline used the Visium spatial barcodes to generate feature-spot matrix of unique molecular identifier (UMI) counting.

Techniques: